Direct ownership of the underlying securities is what makes everything else about this account type possible. In a mutual fund, an investor owns shares of the fund, and the fund owns the underlying stocks and bonds; the investor has no ability to act on any one holding individually. In a separately managed account, the investor owns the stocks and bonds themselves. That distinction sounds technical, but it is the reason two features exist that a pooled fund cannot offer to an individual investor: loss harvesting at the position level, and customization of what the portfolio holds.
Tax-loss harvesting works differently, and more precisely, in a separately managed account than in a fund. Because each holding is owned individually, a manager can sell a specific position that has fallen below its purchase price to realize a loss for tax purposes, while leaving every other position in the account untouched, and then reinvest the proceeds in a similar but not substantially identical security to maintain the intended exposure. A mutual fund cannot do this for one shareholder alone; any tax consequence inside the fund is shared across all of its holders. A separately managed account's structure is what allows this kind of tax management to be applied continuously and at the level of individual positions rather than only at the level of the whole account. The mechanics of the loss-harvesting transaction itself, including the rule against repurchasing a substantially identical security too soon, are covered on the pages for tax-loss harvesting and the wash sale rule.
Customization is the second feature direct ownership unlocks. An investor in a separately managed account can typically instruct the manager to exclude specific companies, an entire industry, or a concentrated position the investor already holds elsewhere, such as employer stock. A pooled fund's portfolio is shared by every shareholder, so it cannot be altered to suit one investor's individual restrictions; a separately managed account's portfolio belongs to one investor alone, so it can be.
The closely related approach of direct indexing is a specific application of the same structure. Direct indexing means building a separately managed account designed to track a market index by holding its constituent stocks individually, rather than through an index fund, so the investor gets the same tax and customization benefits applied to an index-tracking strategy specifically. Direct indexing is a strategy carried out inside a separately managed account, not a separate account type.
The trade-offs run in the direction the added flexibility suggests. Managing an individual portfolio for one investor, rather than one shared portfolio for thousands of fund shareholders, costs more per account to administer, and separately managed accounts have historically required meaningfully higher minimum investments than a mutual fund or ETF, which has a minimum as low as the price of one share. They are typically paid for through an asset-based advisory fee on the account rather than a fund's built-in expense ratio, and where that fee is bundled together with trading and other services into a single all-inclusive charge, the arrangement is a wrap fee program specifically, which is covered on its own page.